Find non matching sequences between two RefSeq IDs
Hi, I would like to get non aligning sequence and preferably co-ordinates (chr, position) between RefSeq NM_172101 (target of interest) compared to NM_001349727 (non functional paralog)
Can someone please explain maybe with a screenshot of what is the easiest way to achieve this, maybe in BLAST?
Thanks!
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manasishah86 •
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if it is a single one time analysis then blast2sequeces from NCBI could generate a plot and coordinates can be manually noted https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=MegaBlast&PROGRAM=blastn&PAGE_TYPE=BlastSearch&BLAST_SPEC=blast2seq
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