Calculate enrichment factor from a list of GO terms
I have a list of genes and the corresponding GO terms for a non-model organism. Could I calculate enrichment factor from the list of GO terms?
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felipead66
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Yes. You could try using
clusterProfiler::enricherand pass in your GO-term to gene mappings with theTERM2GENEargument. This won't identify GO-term-depletions though. https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html