Retrieving assembly scaffold length information without downloading the sequence?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
how do I assemble centromere regions in a plant genome?
written by evyk •I'm assembling a new genome for a plant de novo. I already have the scaffolds and most of the assembly but the parts in the …
-
Information like Genome size, gene count, chromosomes numbers, contigs and scaffolds etc using a li…
written by Nelo •I have a list of plant species for which I want to get information like: Genome size; protein coding gene; chromosomes numbers; contigs and scaffolds …
-
PAML (CODEML) with 0 branch lengths
written by DNAlias •How does PAML interpret branches with lengths of 0? If you have sequences like this in your tree, what is the best way to proceed?
-
Translation for genes with introns
written by DNAlias •I used tBLASTn to find a homolog for a human RefSeq gene in an unannotated genome. I want to find the corresponding protein sequence, but …
-
ClustalW output MSA in R (without consensus)
written by DNAlias •Is there a way to do a multiple sequence alignment that can be written as a file in ClustalW format in R? I've been trying …
-
ClustalW output MSA in R (without consensus)
written by DNAlias •Is there a way to do a multiple sequence alignment that can be written as a file in ClustalW format in R? I've been trying …
-
How to generate a multiple sequence alignment that retains the annotations from the original sequen…
written by DNAlias •I want to generate a multiple sequence alignment that retains the annotations I made on a list of protein sequences (eg. Stockholm file format). Is …
-
anlyzing expression of gene from sra database
written by rajdeepjaswal52 •hi all i am very new to bioinformatics.I wanted to see the expression of single gene from different transcriptomic data of organisms without downloading sra …
-
Aligning fasta sequences against a reference genome with scaffolds
written by thjnantHello, I have a reference genome that consists only of scaffolds without the assignment of scaffolds to any chromosome. My reference genome is in fasta …
-
Get SMILES strings from all compounds with bioactivity data in PubChem
written by miquelduranfrigolaHi all, I need the full list of CIDs (and corresponding SMILES string) of compounds that have been screened in BioActivity assays in PubChem. What …
you will need to provide more details if you want to receive valuable answers. Eg. which assembly? where are you 'downloading' it from?
Please go through [[ Please read before posting a question ::: How To Ask A Good Question ]] and then consider editing your question.
I assume you are referring to data in NCBI?
By checking the assembly report. Here is a random example from NCBI. Click on the
Assembly Statisticsto see the information you want.