Good afternoon,

I have a phased VCF file with the variation of my target genes. I have the reference for each of the genes and for each of the different samples, I would like to create a different fasta file, including the variations reported in the phased VCF file. I did the SNP calling with GATK and the phasing with BEAGLE, but I did not find anything related to this last step.

If you could help me I would appreacite it a lot, as is the last step I have for getting my fastas and start analyzing my data.

Thank you very much!