This is a test version of Biostars. For the public version, visit https://www.biostars.org.
DEG from RPKM...

Hi,

I have downloaded a RPKM table from GEO and I couldn't have access to the read files as they were private. I see different methods for discovering deferentially expressed genes consider genes with RPKM>1 and adjusted p value<0.05 as DEG. However, the table that I have downloaded doesn't provide the p values and the columns just include samples. How can I find the deferentially expressed genes with such a table?

rna-seq

Hello jabbari.parnian!

We believe that this post does not fit the main topic of this site.

Please use the search function. This has extensively been discussed before.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

0 answers

No answers yet.

Log in to answer this question.