how to identify reference genes based on RNA-seq data
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
RNAseq meta-analysis to identify “consistently expressed” genes
written by cgibbsm •Hi all, I am performing an RNAseq meta-analysis, using multiple publicly available RNAseq datasets from NCBI (same species, different conditions). My goal is to identify …
-
Ranking gene list for GOrilla gene ontology enrichment analysis
written by Mikael •Hi, I did a differential expression analysis using RNA-seq data from control and gene knockdown cells. Now I have a DE gene list and I …
-
RNA-seq raw counts normalization for survival analysis
written by fifty_fifty •I have a TCGA raw RNA-seq counts (HTseq) for tumor samples. I want to do survival analysis based on gene expression for a particular gene …
-
Is there a data base, tool or method I can use to find out which of my genes code for cytokine rece…
written by charlesgwellem •I have a list of over 600 differentially expressed genes from my single cell RNA seq data analyses. I want to proceed to find out …
-
Smart-seq2 single-cell RNA-Seq
written by wangdp123Hi there, The data generated from Smart-seq2 single-cell RNA-Seq protocol seems to have very unbalanced gene expression values. For example, if you did the differential …
-
what are gene ratio and bg ratio in differentially expressed gene enrichment analysis?
written by tuf58502 •I got some differentially expressed genes after RNA-seq and Deseq2 normalization and I want to know their functions in some specific pathways. I uploaded the …
-
Normalization and differential analysis in ATAC-seq data
written by anais1396 •Hello everyone! I would like to know if someone had experiences with normalization and differential expression on ATAC-seq data. After using MACS2 for the peak …
-
Tool: ARCHS4: Massive Mining of Publicly Available RNA-seq Data from Human and Mouse
written by alexander.lachmann •RNA-sequencing (RNA-seq) is currently the leading technology for genome-wide transcript quantification. While the volume of RNA-seq data is rapidly increasing, the currently publicly available RNA-seq …
-
Difference between RNA-sq and Transcriptome
written by Gene-ticks •<p>Hi,</p> <p>I am new to Molecular biology and Bioinformatics. I am starting a project where I need to get Transcriptome data and RNA-seq data. Could …
-
How To Clustering Data Based On Reference?
written by quge856 •<p>Dear All,</p> <p>Give a data set (RNA-seq -> RPKM value -> standardisation), one of them (let me say gene X1) is my interest, I want …
Is this standard RNA-seq?
What is the organism you are working on?