This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Monocle3 pseudotime installation issues

Hi all,

I was wondering if anybody is having issues installing or updating Monocle3 from Github? I get the following error that I'm not sure how to solve:

devtools::install_github('cole-trapnell-lab/leidenbase') Error: Failed to install 'unknown package' from GitHub: HTTP error 403. API rate limit exceeded for 82.28.193.182. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)

Rate limit remaining: 0/60 Rate limit reset at: 2020-05-05 17:54:59 UTC

To increase your GitHub API rate limit - Use usethis::browse_github_pat() to create a Personal Access Token. - Use usethis::edit_r_environ() and add the token as GITHUB_PAT.

devtools::install_github('cole-trapnell-lab/monocle3') Error: Failed to install 'unknown package' from GitHub: HTTP error 403. API rate limit exceeded for 82.28.193.182. (But here's the good news: Authenticated requests get a higher rate limit. Check out the documentation for more details.)

Rate limit remaining: 0/60 Rate limit reset at: 2020-05-05 17:55:00 UTC

To increase your GitHub API rate limit - Use usethis::browse_github_pat() to create a Personal Access Token. - Use usethis::edit_r_environ() and add the token as GITHUB_PAT.

Any help would be really appreciated!

rna-seq

1 answer

I would try again, it appears Github had some degraded service issues earlier today.

Log in to answer this question.