Identification of shared modules

Hi,

If you have three disease networks:

What method would you choose for the identification of shared disease modules: specific betweeness (S2B) OR Cytoscape such as ModuLand plugin and why?

Thanks

shared modules

• 897 views • link

updated 6.3 years ago by Kevin Blighe

• written 6.3 years ago by zelda •

1 answer

At the large risk that nobody will respond, here are two excellent starting points for you:

S2B: Searching the overlap between network modules with specific betweeness (S2B) and its application to cross-disease analysis
ModuLand: Community Landscapes: An Integrative Approach to Determine Overlapping Network Module Hierarchy, Identify Key Nodes and Predict Network Dynamics

Kevin

• 0 views • link

written 6.3 years ago by Kevin Blighe

More posts like this

WGCNA modulePreservation on three expression sets
written 2.3 years ago by CTLong •

Hi, I am interested in finding preserved modules across three conditions. As such, I performed WGCNA on each condition independently to obtain condition-specific modules. Now, …
node rewiring analysis using DyNet app in the Cytoscape
written 3.9 years ago by adR

Hi everyone, 1st of all, thanks for answering my question. I have three different network data such as network1, netnetwork2, and network3, for A, B, …
centrality scores in network
written 7.2 years ago by hennet.lauriane •

Hi, I have two questions regarding the different scores of centralities and the way to calculate them. First one is, every one uses connectivity (or …
Finding a way to comparison induced cells and real tissue by Cytoscape!
written 7.7 years ago by Calangoa •

Hi, I have some gene expression data from induced cells by some small molecule in vitro (different kind of small molecules in different data sets) …
How to use Jactivemodule plugin from Cytoscape?
written 7.8 years ago by Calangoa •

Hi there, I want to construct a lot of networks to show, what are the effects of different culture medium to convert a specific cells …
Identifying interactors of hub genes using Cytoscape Network Analyzer plugin
written 10.3 years ago by ishengomae

I have used Network-Analyzer Cytoscape plugin to identify hub proteins - nodes with the highest node degree distribution - in my protein-protein interaction networks. Now …
Network-Based Target Selection For Multi-Targeted Therapy
written 12.7 years ago by miquelduranfrigola

Hi all, does any of you know of a method to select multiple targets that, if perturbed together, would result in a synergistic effect? If …
Reactome Fi Plugin Cytoscape Help
written 15.1 years ago by Tanvi •

Reactome FI Plugin cytoscape help I have microarray data and using reactome FI plugin in cytoscape I want to build gene interaction network. After loading …
Reactome Fi Plugin Cytoscape Help
written 15.1 years ago by Tanvi •

Reactome FI Plugin cytoscape help I have microarray data and using reactome FI plugin in cytoscape I want to build gene interaction network. After loading …
Library / Module For Network Analysis
written 16.1 years ago by Khader Shameer

I would like to know what libraries/modules are used by BioStar members for large scale analysis of networks (for example PPI, DDI etc). I am …