Export Results from BatchQC Shiny App
I am working with the BatchQC bioconductor package, which works great for visualizing batch effects, and running sva and ComBat for comparison, but I would like to export the ComBat and sva results that show in the shiny app to share with my collaborators so they don't have to rerun the program and wait for the ComBat and SVA results. Is there an easy method to do this? There is no "generate report" within the interactive shiny app/window, and the results don't show up in the html report generated by rmarkdown. Suggestions would be greatly appreciated.
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