This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Correlation Between Tags On The Sense And Antisense Strand?

Is there any software that yields the cross-correlation between the sense and antisense strand of tag data in wiggle or bedgraph format?

correlation wiggle

1 answer

I'll answer my own question here. Homer does this: http://biowhat.ucsd.edu/homer/chipseq/qc.html#Sequencing_Fragment_Length_Estimation

Log in to answer this question.