BLAT error while execution
Hi, I installed BLAT locally using :
conda install -c bioconda blat
Then I ran BLAT with the following command:
blat /path/to/hg19.fa /dev/null /dev/null -makeOoc=/path/to/hg19.fa.11.ooc -repMatch=1024
When I run my fasta file it gives me an error:
blat /home/user/hg19.fa /home/user/Desktop/unaligned.fasta -ooc= /home/user/hg19.fa.11.ooc
Loaded 3137161264 letters in 93 sequences
mustOpen: Can't open to read: No such file or directory
Kindly guide. Thanks.
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amitpande74 •
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That is odd. I just tried the command and was able to generate
.oocfile from a single multi-fasta human genome file. I don't know why you are getting following line?I just got the following:
Hi genomax, I just followed the instructions from this post: A: Is there a more efficient way of checking multiple sequences for how many hits t
What should be done to make a ooc file ? What was the command line you had used. Kindly help.
Got it genomax. Thanks.
It was the same command as yours from original post. I assume the problem has been solved?
The output message has a whitespace there, is this whitespace also in your input command?
That may be a red herring unless the original command had a space. We have no way to know.