Venn Diagram from count species in R
Hello! I don’t understand how to create a venn diagram from a simple species table. For example, three sites. How to calculate overlapping region between them?
Column - species Row- sites
Sp1 Sp2 Sp3
Site1 1 0 1
Site2 2 2 0
Site3 0 5 4
I found a library limma
venn <- (read.table("table.txt"))
datavenn <- vennCounts(venn)
vennDiagram(datavenn)
But this is only suitable for literal variables.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Extract different variants of a vcf file comparing to other vcf files
written by minoo •
-
Upset plot using python
written by Ric
-
Upset plot from orthofinder genecount.tsv file using python
written by Shakunthala Natarajan •
-
How to calculate overlap of peptides between different categories to create Ven diagram
written by ishackm
-
Script error when extracting sequences of a list of orthologous groups
written by biomonte
-
Is limma suitable for identifying differentially expressed genes across species?
written by EvoGen •
-
Trying to understand differential gene expression through Venn Diagrams from the 'limma' R package:…
written by hmg •
-
How Can I Generate A Venn Diagram In R For A Given Csv File
written by Payal •
-
Using Genes List From Limma Venn Diagram To Make Heat Map
written by Ly •
