Order by length sequence
Hi everyone.
I want to order a fasta file where i have 35000 sequences with different length in nucleotides. But i don't know how to do it.
Examples:
>contig_1
AAATCGAAACTAGACCATAGC
>contig_2
AAAAAACGTACAGAC
>contig_3
TTTTCGACAAACGAAAACGATTAGCCCAGAC
i want to ordering like this (from shorter to larger length):
>contig_1
AAAAAACGTACAGAC
>contig_2
AAATCGAAACTAGACCATAGC
>contig_3
TTTTCGACAAACGAAAACGATTAGCCCAGAC
I already red another post how to rearrange fasta file according to its length and there is a script but i think that is bad because doesn't run when a ran it.
Please help.
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GenoMax
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stambukf •
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stambukf •
1 answer
Please use the search function, this has been adressed before:
how to rearrange fasta file according to its length
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You can also use SEDA. The Sort operation (under Choose operation / Reformatting) allows you to order by sequence length.