Single-Linkage Clustering Of Ngs Reads From A .Bam File
Hi, is there any existing software to cluster aligned reads form a .bam file with a single-linkage clustering, or a script which generates a distance matrix from a .bam file? thank you!
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Sukhi Singh
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pmuench •
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pmuench •
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If you know Java or Haskell, there is a question asking what you want here. Check the answers. They are working on sam file which you can convert from bam using samtools samtools view file.bam > file.sam, just in case.
If you want to use some automated tool, use chipster. It includes the clustering options. I met these guys from Finland, the tool looks nice but I haven't tested it yet.
Cheers
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