How to do a PCA plot on the exome data using different library kits?
Hi,
I have around 1000 exome data (fastq, bam, vcf). I want to a PCA plot on the exome data using different library kits for the QC step. I would expect the PCA plots showing clusters of samples using different library kits.
May I know any suggestion? Any software package can help? Use BAM or VCF file?
Thanks a lot!
Regards, Mullin
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This should give you an idea.
Hi, there. Have you got any ideas?
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