error in installation of DESeq2 in RStudio
I need help with installation of DESeq2 in Rstudio.
This is the error message i receive also my ubuntu software shows libxml2-dev is already the newest version
can someone help me understand what am i missing and help me fix this error please!!
The downloaded source packages are in
‘/tmp/RtmpesQ4af/downloaded_packages’
Installation path not writeable, unable to update packages: foreign, lattice, nlme, nnet, survival
Warning messages:
1: In install.packages(...) :
installation of package ‘jpeg’ had non-zero exit status
2: In install.packages(...) :
installation of package ‘latticeExtra’ had non-zero exit status
3: In install.packages(...) :
installation of package ‘Hmisc’ had non-zero exit status
4: In install.packages(...) :
installation of package ‘DESeq2’ had non-zero exit status
and this is the error i get when i tried installing RCurl
The downloaded source packages are in
‘/tmp/RtmpesQ4af/downloaded_packages’
Installation path not writeable, unable to update packages: foreign, lattice, nlme, nnet, survival
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ravi.eshwari •
1 answer
Try this:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DESeq2")
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zx8754
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tothepoint
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tothepoint
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Why are these packages in
/tmp? This is the memory of your machine and not writable (nor is this recommended to install things there)? Did you use the Bioc command devarora provided below?yes i tried the commands provided by devarora i end up getting the same error
with the /tmp thanks for letting me know i shall check with it
yes i did i still get the same error i posted :(
Try this:
or try installing from their source file available here: DESeq2
i could successfully install DESeq2 finally thanks much!!
Hello ravi.eshwari!
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