Plotting immunophenogram: Arguments implying different numbe rof rows error
I have encountered an error:
Error in data.frame(start = c(0, 2.5, 5, 7.5, 10, 15, seq(20, 39), 0, :
arguments imply differing number of rows: 31, 30, 36
While im trying to plot an immunophenogram. The code that made the error is below. Please help!
data_a <- data.frame (start = c(0,2.5,5,7.5,10,15, seq(20,39),0,5,10,15,20),
end = c(2.5,5,7.5,10,15, seq(20,40),0,5,10,15, 20),
y1=c(rep(2.6,26),rep(0.4,4)),
y2=c(rep(5.6,26),rep(2.2,4)),
z=c(MIG[c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18)],
Activated_B_cell, Active_CD4_T_cell,Active_CD8_T_cell,
Effector_Memory_CD4_T_cell, Effector_Memory_CD8_T_cell,
MDSC, Natural_Killer_cell, Neutrophil, Regulatory_T_cell,
MHC, Immune_Checkpoint, Angiogenesis_Avastin_drug_response_marker,
Catalytic_Activity, Hypoxia_monitor, Immune_Response_Signature,
Stimulatory_dentritic_cell_regulation, Tumor_Secretory_Cytokines,
Wnt_signaling),
vcol=c(unlist(lapply(MIG[c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18)],mapcolors)),
unlist(lapply(c(Activated_B_cell, Active_CD4_T_cell,Active_CD8_T_cell,Effector_Memory_CD4_T_cell,
Effector_Memory_CD8_T_cell, MDSC, Natural_Killer_cell,
Neutrophil, Regulatory_T_cell, MHC, Immune_Checkpoint,
Angiogenesis_Avastin_drug_response_marker, Catalytic_Activity,
Hypoxia_monitor, Immune_Response_Signature,
Stimulatory_dentritic_cell_regulation,
Tumor_Secretory_Cytokines, Wnt_signaling),
mapbw))),
label = c(unique_ips_genes[c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18)],
"Activated B cell","Active CD4 T cell","Active CD8 T cell",
"Effector Memory CD4 T cell", "Effector Memory CD8 T cell",
"MDSC", "Natural Killer cell", "Neutrophil",
"Regulatory T cell", "MHC", "Immune Checkpoint",
"Angiogenesis - Avastin drug response marker",
"Catalytic Activity", "Hypoxia monitor",
"Immune Response Signature", "Stimulatory dentritic cell regulation",
"Tumor Secretory Cytokines", "Wnt signaling")
)
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ngcatung0 •
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ngcatung0 •
1 answer
To simplify the problem:
myX = 1:3
myY = 1:4
data.frame(x = myX, y = myY)
# Error in data.frame(x = myX, y = myY) :
# arguments imply differing number of rows: 3, 4
Length of your columns are different, ensure every column has the same number of items.
length(myX)
# [1] 3
length(myY)
# [1] 4
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