This is a test version of Biostars. For the public version, visit https://www.biostars.org.
To Calculate Solvent Accessibility With Wesa

Hello all,

       I would like to run WESA (http://pipe.scs.fsu.edu/wesa.html) in batch mode to calculate solvent accessibility of protein sequences. For this, I tried the following command on windows command prompt. I got the command from <http://pipe.scs.fsu.edu/PostHandler/WESA-PostHandler.htm.> 

C:\Python27>python WESA-submit.py   area   ksha@gmail.com  C:/seqs.fasta  > $1.html
Traceback (most recent call last):
File "WESA-submit.py", line 4, in <module>
 import MultipartPostHandler, urllib2, cookielib
ImportError: No module named MultipartPostHandler

I have already saved the WESA-submit.py, MultipartPostHandler.py scripts on Python27 directory. Any suggestions please

protein python
• 2,932 views • link
updated by Biostar Biostar • written by tesni • tesni

1 answer

it is not a server error, the problem is you don't have Python module MultipartPostHandler. Try to install MultipartPostHandler from http://pypi.python.org/pypi/MultipartPostHandler/0.1.0#downloads (or try google)

• 0 views • link
written by Sheila Sheila

@sheila Thank you very much for your answer.It worked well.

• 0 views • link
written by tesni • tesni

Log in to answer this question.

More posts like this
  • Error Using Bio.Unigene Parser
    written by lukas1 • lukas1
    <p>I am re-analyzing some microarray datasets where GenBank and RefSeq accession IDs are the best identifiers for mapping probes to genes. My primary source for …
  • Alignio Gives 'Assertionerror' When Reading Emboss Alignment Files
    written by a1ultima a1ultima
    <p>I have been stuck on a problem for three days... searched everywhere, posted on <a href='http://stackoverflow.com/questions/20159230/alignio-gives-assertionerror-when-reading-emboss-alignment-files'>StackOverflow</a>, still waiting for EMBL to respond to emails... </p> …
  • Retrieving Fasta Sequences From Ncbi Using Biopython
    written by Ankur • Ankur
    <p>I have a file with GI numbers and would like to get <code>FASTA</code> sequences from ncbi.</p> <pre><code>from Bio import Entrez import time Entrez.email ="eigtw59tyjrt403@gmail.com" f …
  • Error With Kegg Api Sample Code For Python
    written by JRCX • JRCX
    <p>Hello!</p> <p>I'm new in programming, coming from Engineering background. When trying to run <a href='http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html#label:10'>KEGG APi sample code</a> for Python in Pycharm (first do <code>pip …
  • Biopython Import Error
    written by angeles.sepulvedap • angeles.sepulvedap
    <p>Hi everybody!</p> <p>I have a hugh problem and I need to came out with the solution as soon as I can. I want to uso …
  • Error: Dssp With Biopython
    written by Veena • Veena
    <p>Hello,</p> <p>I am trying to run DSSP with Biopython. I have installed biopython 1.59 with python 2.7.2 in windows OS.</p> <pre><code>&gt;&gt;&gt; from Bio.PDB.PDBParser import PDBParser …
  • Error: Parsing Pdb File With Biopython
    written by Mkl • Mkl
    <p>I am trying to parse a PDB file and also trying to extract some Model, Chain, Residue and Atom objects with Biopython. I tried the …
  • Clustalw Alignment Error In Biopython
    written by Mkl • Mkl
    <p>Hi ,</p> <p>I tried the following code to run clustalw . But I am getting error.</p> <pre><code>&gt;&gt;&gt; from Bio.Align.Applications import ClustalwCommandline &gt;&gt;&gt; cline = ClustalwCommandline("clustalw2", …
  • Musclecommandline Not Writing File
    written by Jabovl • Jabovl
    <p>I'm trying to work through the Biopython tutorial on multiple sequence alignment and get an error whenever I try to use subprocess:</p> <pre><code>child = subprocess.Popen(str(cline), …
  • Windows Cmd Not Responding With Python Blastall 2.2.17
    written by Niek De Klein Niek De Klein
    <p>I'm using the standalone BLAST 2.2.17 with python. However, I'm having a problem with the cmd. When running the script the cmd stops responding at …