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Local non-kart file has 0 unresolved dependencies?

Hello all: I have been trying to download data from sratoolkit using a submission script: 

for i in SraAccList;
do
/scratch/lindsawi/PROJECT-ONE/quant/sratoolkit.2.9.4-ubuntu64/bin/prefetch.2.9.4 --option-file /scratch/lindsawi/PROJECT-ONE/quant/SraAccList.txt/ --output-directory ../raw/SRA_files/;
done

And I get the following message in my .o file: prefetch.2.9.4: 'SRR3194428' is a local non-kart file prefetch.2.9.4: 'SRR3194428' has 0 unresolved dependencies

for all items in SraAccList

No additional information is being written to my machine file or error file when I run the job, but there is no data downloaded to my output location. I am not sure what I am doing wrong?

sratoolkit sra rna-seq
• 2,807 views • link
updated by Arup Ghosh Arup Ghosh • written by lin97868 • lin97868

I'm not sure why you are using a loop when $i is never used in the prefetch command and remove / after SraAccList.txt.

• 0 views • link
written by Arup Ghosh Arup Ghosh

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