Thanks! I might give a try.
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Rashedul Islam
Alternative splicing event annotations method
Hi,
I am looking for a computational method to identify the number of instances of each alternative event category listed below from RNA-seq data. I tried MISO but does not give the output I wanted.
Any suggestion or link to any tool will be very helpful!
The event categories:
Skipped exons (SE)
Alternative 3’/5’ splice sites (A3SS, A5SS)
Mutually exclusive exons (MXE)
Tandem 3’ UTRs (TandemUTR)
Retained introns (RI)
Alternative first exons (AFE)
Alternative last exons (ALE)
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lieven.sterck
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Rashedul Islam
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Rashedul Islam
1 answer
In this publication: Exploration of alternative splicing events in ten different grapevine cultivars. , they introduced a tool called findAS , perhaps that could be of use?
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lieven.sterck
I found this review that summarizes the tools used to find most of the alternative splicing events from RNA-seq.
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Rashedul Islam
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