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Genome aligner that shows annotations too

Hi,

I am looking for a tool that can align two closely related eukaryotic genomes (or parts of the genomes, because the genomes themselves are quite large). I also need this tools to show genome annotations, such as genes or BED regions along with the alignments. Can anyone suggest anything?

Thanks.

Best,

Dan

alignment genome annotations
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written by danvoronov • danvoronov

1 answer

So far the only one I was able to find for the genomes is Mauve . It allows to align the sequences and allows visualization of the alignment while showing the annotation features of your sequences.

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written by danvoronov • danvoronov

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