RNA-seq find marker genes
Hi all, How can I extract marker genes from an RNA-seq expression profile matrix? I tried MGFR algorithm (https://bioconductor.org/packages/release/bioc/html/MGFR.html) but unfortunately the resulting marker list does not contain the marker gene names even if the algorithm works. Is there any other way to compute those biomarker?
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Massimo
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Ciao, what is the aim of your work?; how would you define a 'marker'? There are countless / many ways that one can find marker genes. It could be via: