This is a test version of Biostars. For the public version, visit https://www.biostars.org.
energy minimization calculation

Hi,Recently I modeled a protein using I tesser and then mutate the model using Swiss PDB Viewer.Now I want to minimize the energy by Nomad Ref server ( http://lorentz.dynstr.pasteur.fr/nomad-ref.php ) ,but i can't access the server. Anyone can tell me the way of accessing the server as well as suggest me the best way to minimize the energy please?

Thank You

snp
• 1,213 views • link
written by fatema19.bge • fatema19.bge

Have you tried the following things:

-Write a short email to the admins of this service asking them about this problem? I have never used this service however to me it seems that the service is restricted to certain users.

-tried using other simulation suites (Gromacs, which is free to use) for energy minimization?

• 0 views • link
written by manaswwm manaswwm

Thank You yes I already tried gromacs but this server needs linux command which is very tedious to me ...So i need alternate way to perform my target.. would you please suggest me the way of accessing the nomad ref server ?

Thanks again .

• 0 views • link
written by fatema19.bge • fatema19.bge

0 answers

No answers yet.

Log in to answer this question.

More posts like this