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Validation of protein 3D modelling

Actually I use I-TASSER for protein 3D modelling but I can not valid the model by PDBsum because I can not find out any PDB code for newly modeled protein in I-TASSER. Now how can I valid the model by using PDBsum ? Please can any one help me ? Thank you in advance.

snp

What do you mean by validate?

Of course there is no PDB code for your models, because they aren't entries in the PDB. PDB has no knowledge of those models.

The short answer to your question, I think, is you cannot use PDBsum for your own models.

1 answer

PDBsum validation of your model can be done by submitting a PDB file here. Alternatively, you may be interested in downloading PROCHECK and doing the validation locally.

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