issue running DeepMod
Can we run DeepMod tool on HPC cluster? I am trying to analyse Nanopore data by submitting the deepmod script through "qsub" in cluster,but it got stopped after giving error of minimap2 file not found.
the point here is , that this tool is already present in cluster and also I tried by giving the path in the script. Please help.
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priya120195 •
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Your question includes very little information so is unlikely to get a helpful answer.
My question is
Can we run tools like Deepmod,Deepsignal,Tombo in HPC clusters??
Yes, of course. You likely have to set up the conda environment properly, eg on globally cluster accessible storage, then set your script to read the environment on the cluster node which is running it.
But this all depends on your script, your cluster environment, and therefore the information you provide.