Removing Contigs and Redundant Sequences.
After finishing the assembly, I am left out with contigs and redundant sequences which I have no clue as how to remove them from my data. Many online sources suggested using CD-Hit, but I am unable to understand that. Can anybody help in this regards.?
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vishalchanda364 •
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What do you mean by that? You have contigs and suspect some of those are redundant?
CD-HIT is a suite of programs that will remove redundancy in your dataset leaving unique sequences behind.
Thank you so much for the help. But I still cannot make progress with that. Is there any good paper which i can cite for the issue mentioned.?