Available annotation file for the PacBio Iso-seq data
I am working with Iso-seq data from PacBio looking for the new transcripts. but when I follow their pipeline at the end the IDs are like these examples:
gene_id "PB.3"; transcript_id "PB.3.1"
so, my question is that is there any annotation file for the PacBio IDs and data?
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Hi Sara,
I also have the same question. I wasn't immediately able to find an obvious annotation file to convert these pacbio IDs to HGNC or ENSG IDs. Were you able to find anything?
Best, Michael
Not familiar with IsoSeq pipeline specifically but if these are "new" transcripts then you will need to do some blast searching to annotate them?