using pfilt on uniref100 database

Is it necessary to use pfilt on uniref100 database before we use BLAST on the query?

The information related to pfilt is there in the given link:

http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/

Anyone please suggest.

blastp uniref100 pfilt

• 1,012 views • link

written 6.6 years ago by shalinikaushik1293 •

0 answers

No answers yet.

More posts like this

POSSUM Bioinformatics Tool
written 3.5 years ago by Muny •

I am trying to use the POSSUM Bioinformatics tool locally as I want to generate PSSM features using the UniRef100 database as my reference db. …
automation of shell script where I want to change filename after every result
written 6.3 years ago by shalinikaushik1293 •

Hello everyone I want to run the pGenThreader script for a 7,000 proteins but for that I need to replace the protein file after every …
wrong version of formatdb was used to make database
written 6.6 years ago by shalinikaushik1293 •

I am using uniref100 database for running the psipred script (runpsipred) on macOS. On running the runpsipred script : #!/bin/tcsh # This is a simple …
BLAST nr database
written 6.6 years ago by shalinikaushik1293 •

I am running the command for BLAST : blastp -query /Users/shalini/Desktop/shalini/project/unmodelled_fasta/AAA18895.fasta -outfmt "7 sacc qcovs pident ppos evalue" -db=/Users/shalini/Downloads/nr -out=/Users/shalini/Desktop/shalini/project/blast_resultnr After running for one and …
PSIPRED, how to install and make it work?
written 8.9 years ago by ac.research •

Dear All, I am trying to setup PSIPRED to run a secondary structure prediction but the README.md file is not detailed enough for a beginner …
HT_HG-U133A_EA probe tab annotation file
written 10.2 years ago by rv •

Hello everyone, I am searching for the probe tab annotation file for the Affymetrix platform: ht_hg-u133a_ea wich is used for some drug assays at Connectivity …
How to calculate effective query length in TBLASTN
written 10.3 years ago by islama •

Hi,<br/> I am comparing a local alignment method with TBLASTN. In the BLAST report, I can't reproduce the effective query length value based on the …
help with installation of psipred
written 10.4 years ago by pingEde •

Hello! Does anyone install psipred ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/README) ? In the file README is reported that after you install psipred: "You must also install the PSI-BLAST …
blastn execution error, the correct command line format
written 11.6 years ago by vigneshprbh37 •

So I am trying to test my blast+ standalone program with the following command ./blastn -db /home/Desktop/ncbi-blast-2.2.30+/db/nr -query /home/Downloads/sequence.fasta -out /home/CCMB/Downloads/output/result but every time I …
Trying To Run Psipred But Failing To Use Blastpgp
written 13.3 years ago by arronslacey

<p>Hi - I am trying to run psipred (<a href='http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/'>http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/</a>) and it requires blast+ to be installed. I have done this, and all the blast …