Pan-cancer dataset of GENIE control data download and sharing

Question

[Shicheng Guo]

Hi All,

The GDC has released genomic data for 44,756 cancer cases spanning 294 disease types from ⁦‪AACR‬⁩ Project GENIE. Who knows how to download Masked Annotated Somatic Mutations, Gene Level Copy Number Scores and Transcript Fusion data since they are controlled.

Thanks.

Answer 1

[ATpoint]

Data are restricted (as most data of human origin in public databases). The docs explain how to apply for access: https://gdc.cancer.gov/access-data/obtaining-access-controlled-data