This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to perform a gene set analysis in edgeR?

I would like to test if the certain genes (~400) are differentially expressed between 2 conditions. I performed DE analysis in edgeR, however, I want to make a heat map only of the genes of interest. I have the list of this genes in FASTA format (both gene names + sequences). How can this analysis be carried out?

rna-seq r

What are the IDs (First column in the edgeR input file) you're using to run edgeR.?

0 answers

No answers yet.

Log in to answer this question.