Hi,
I have like 2000+ IMG(https://img.jgi.doe.gov/) gene IDs, for example, 637038738, and I would like to get the aa sequence of that gene. I have searched for hours but couldn't find a way to do that automatically.
I don't need to the whole organism genome so the API (https://genome.jgi.doe.gov/portal/help/download.jsf)wouldn't help.
I was wondering if anyone have any insights or suggestions?
Thank you very much
Angel
1 answer
For anyone who's wondering: here's the solution from Amy Chen from the IMG: (I clicked the "contact us" button)
After you select and add 2000+ genes into gene cart, click "Select All" button, then go to the "Upload & Export & Save" tab to find the export function. In the "Export Genes" section, select "FASTA Amino Acid format" and click "Show in Export Format"
I've tried and this works!
Angel
Log in to answer this question.
-
Need Help : JGI IMG Bulk Download
written by Ananaya •
-
Integrating gene ontology DB's into pipeline scripts
written by joemrosen •
-
A script work for downloading metagenomes from JGI?
written by maan.alyaa •
-
how to convert kegg ids to gene names
written by lily •
-
recover IMG ids from JGI site
written by sapuizait •
-
Download multiple protein sequences from IMG IDs
written by A_heath •
-
GO annotation with entrez gene id for non-model organism
written by bifStudent •
-
JGI IMG/M bulk download to AWS S3 bucket
written by noodle
-
How To Retrieve Data From Jgi Automatically Given A Set Of Ids?
written by Manu Prestat
-
Direct Url Links To Img Gene Details Using Gene Locus Tags
written by chrismgowen •
