Hi biostars,

I have detected a set of deletions in my samples, and now I want to classify the deletions into a DNA repair pathway such as Non Homologous End Joining or Homologous Recombination. I have seen that there are some tools out there (e.g. BreakSeq2) but I have not found any evaluation or review of the tools. Hence:

1. Has somebody use a tool for annotating the Structural variant mechanism into a DNA repair pathway?
2. If so, Which one would you recommend?

Thanks for your help!