I've been instructed to use phylosift https://www.ncbi.nlm.nih.gov/pubmed/24482762 to identifying ribosomal proteins (not ribosomal RNA). I've had a lot of issues getting the installation to work because of all the dependencies and perl packages. Unfortunately, there is no conda installation plus a lot of the links are broken on their website https://phylosift.wordpress.com/tutorials/downloading-phylosift/

Are there any other tools that I can use to identify ribosomal proteins at the bacterial and archaeal level (possibly protists as well?). Preferably something that is conda installable because of dependency issues.