error in trinity
hi , I am doing denovo assembly by using trinity. data is not from SRA . .but got these error .how can i resolve it ?
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> Error, not recognizing read name formatting: [NS500786:42:HA1AGGAAGACCACGAATTGCCTTGTGAAEEAEEEGXX:2:1210G:7930EAE/EEEEEAE/EAEEEEEE/AA<A/E/AE/EE/EEECGCAGATG13379EAAEEEEAAGAAAAA]
>If your data come from SRA, be sure to dump the fastq file like so:
SRA_TOOLKIT/fastq-dump --defline-seq '@$sn[_$rn]/$ri' --split-files file.sra
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fatimarasool135 please share the complete command that you executed
Hi, I have run this command
the fastq file look like that
head G2_forward_paired.fqG2_reverse_paired.fqCould you at least spell the name of the tool you are using correctly? Please put some more effort into your questions.