Which max-gap value will be suitable for Bovine 50K SNP chip data in selscan software?

Dear members, I'm using Bovine 50K SNP data in which the distance bet 2 SNPs will be 50.6 kb. In selscan software, which value should I use for that --max-gap (i.e. maximum allowed gap between loci when assembling haplotypes for iHS; Default is 200, 000 bp)?

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written 6.8 years ago by kas •

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