Retrieving sequence from NCBI
I've a species list and a gene list. I need to create a file which contains sequence of each species with respect to that gene. Is there any easy way to retrieve sequence from ncbi as i needed ? Otherwise it is difficult to do one by one. also time consuming. Your consideration will be a sort of great favor. Thank You..
• 1,373 views
•
link
updated
by
JC
•
written
by
ashaneev07 •
•
written
by
ashaneev07 •
1 answer
Use E-utilities, with minimal programming you can do it with BioPython
Log in to answer this question.
More posts like this
-
Converting gene_ids from GTF file to common gene symbols
written by Gus •
-
Converting Ensembl ID to NCBI ID
written by botloggy •
-
Blasting one gene/protein against all complete genomes from bacteria and archaea
written by kilikun •
-
Batch Annotation of Bacterial Gene Clusters
written by kayrouz.1 •
-
Pathway annotation using KEGG
written by sharmatina189059 •
-
How I get mRNA accession no if I have gene name and location with the help of perl
written by georgians •
-
Extract genes from gene list
written by Bioblazer
-
Create a file with a summary of all gbk files in a folder and subfolders
written by benarnon •
-
vcf to fasta CDS converter
written by mosquitoes •
-
How To Retrieve Upstream Sequences Of A Single Gene From Multiple Bacterial Species?
written by Magdalena •
Can you share an example of what sorta data you have? Do you have gene names or NCBI gene ids?