Creation of a correlation heatmap between samples
0
0
Entering edit mode
4.6 years ago
SeaStar ▴ 50

I have two samples with different degree of expression in tissues.

s1
     name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
    S1       0       0       0       12.1    29.2      1.9    0.45     0.2     17.0    0.4        0.7      0.1


s2            
        name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
        S2       1       2       0.4       14.1    9.2      1.8    0.7     0.9     7.0    0.3        0.7      0.3

I would to plot them with a heatmap. How can I set the parameters?

R gene • 642 views
ADD COMMENT
0
Entering edit mode

You have not explained very well what you wan to do. Please be very specific. Take a look at levelplot (in R), as it may be what you want. I have an implementation of levelplot here, too: https://github.com/kevinblighe/CorLevelPlot

ADD REPLY

Login before adding your answer.

Traffic: 2303 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6