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Correlation matrix from deseq2 results

Hi everyone, i want to build a correlation matrix from deseq2 output and i do not understand how to build it.

rna-seq
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updated by jocelyn.petitto • jocelyn.petitto • written by sg927357 • sg927357

Correlation from what? Normalized counts?

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written by ATpoint ATpoint

1 answer

Refer to Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data. The section 3.12 Calculating Correlation of Gene Expression for Every Pair of Genes explains the steps.

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written by Arindam Ghosh Arindam Ghosh

Is there a version of EBSeq that works for R v4? Or something that has a similar function? I tried to use the pipeline and cannot.

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written by jocelyn.petitto • jocelyn.petitto

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