BLAST, download the sequences and genome organization by using command lines
Dear community,
I have an operon with 3 genes: gene1, gene2 and gene3. I would like to compare these genes and its position from one genome against other genomes.
1) How to do BLAST of each gene and download the closest sequence by command lines?
2) Is that possible to do BLAST only in genomes? How?
3) How can I compare the position of genes? Have the genomes the same organization?
Genome1: gene1 :: gene2 :: gene3
Genome2: gene2 :: gene1 :: gene3
Genome3: gene1 :: gene3 :: gene2
4) What is the best tool to create a figure with genes and its genome organization?
Thank you very much for all your help. Best regards, Diogo
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diogo.proenca •
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