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SRR data assembly

Hello, I'm new in bioinformatics. I'm trying to assembly NCBI data. So, I have downloaded Staphylococcus aureus fastq file from NCBI. The downloaded file name was sra_data.fastq. The code I've used to download the data is : http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=dload&run_list=SRR10231237&format=fastq
I'm using ABySS to assembly sra_data.fastq. I had studied ABySS documentation but unable to find solution. Please I need guidance

assembly
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updated by Biostar Biostar • written by shamsurrahaman132 • shamsurrahaman132

This appears to be RNAtag-seq data. Are you sure you need to assemble this rather than align to a reference?

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written by GenoMax GenoMax

Thank you for the information. Can you guide me how can I download NCBI data?

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written by shamsurrahaman132 • shamsurrahaman132

The link you posted above is downloading data, correct?

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written by GenoMax GenoMax

Yes it is but as you said earlier this is downloading RNA-seq data. I's looking for raw reads more like fastq files so that I can assembly them myself to learn

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written by shamsurrahaman132 • shamsurrahaman132

Those should be raw data i.e. fastq reads.

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written by GenoMax GenoMax

Click on the link you included in your original post. Save the file that is downloaded. It will be gzip compressed and contain the fastq reads.

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written by GenoMax GenoMax

Hello shamsurrahaman132!

We believe that this post does not fit the main topic of this site.

Seems to be solved? Or at least not maing progress, therefore closed.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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written by ATpoint ATpoint

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