[HISAT2 index download][1] [1]: http://daehwankimlab.github.io/hisat2/download/#h-sapiens I’m going to align human rna-seq data to human genome using HISAT2, but which index should I use? What is …
Hi I tried to index reference genome fasta (hg38) that I downloaded UCSC version from below https://www.gungorbudak.com/blog/2018/05/16/how-to-download-hg38-grch38-fasta-human-reference-genome/ Used bwa, samtools(.fa.fai), picard(.dict) Commands are bwa index …
Hello, I use star to make human index. I have hg38.fa file which downloaded from: http://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/ There are four gtf files:`hg38.refGene.gtf.gz, hg38.ncbiRefSeq.gtf.gz, hg38.knownGene.gtf.gz and hg38.ensGene.gtf.gz …
I am looking for a human reference genome. I tried to download the genome from the link http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/ and the file I downloaded is `hg38.fa`. …