This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to build reference index for bowtie?

I am aligning RNA-Seq data to human genome reference hg38. How can I build the index using hg38.fa

Thanks in advance

rna-seq alignment assembly next-gen

1 answer

Bowtie

Building a new index

Bowtie2

The bowtie2-build indexer

Log in to answer this question.