This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Biopython BLAST: how to include minimum coverage in the parameters?

I am using Biopython's NCBIWWW to perform Blast remotely. However, it seems to be impossible to limit the search in terms of coverage, as is possible through standalone Blast.

How come? Is there a way to circumvent this?

biopython blast coverage

as is possible through standalone Blast

Is it? Don't you mean identity? Or it is a new feature but as far as I know it not possible in standalone blast.

I checked this document: https://www.ncbi.nlm.nih.gov/books/NBK279684/

EDIT:

Just saw the -qcov_hsp_perc param, but I think this is per HSP

0 answers

No answers yet.

Log in to answer this question.