Dendrogram line width in heatmap.2

Hi, Is there anyway to control the dendrogram line thickness in heatmap.2() function? This is how one can do that in pheatmap(). I'm looking for something similar in heatmap.2

pheatmp dendrogram line width control

heatmap r heatmap.2 dendrogram lwd

• 2,127 views • link

written 6.9 years ago by The

Welcome to the world of heatmap functions that each do something well but lack in other areas. I'd recommend switching to ComplexHeatmap as it has all the features that all other heatmap packages put together have (plus more).

• 0 views • link

written 6.9 years ago by Ram

0 answers

No answers yet.

More posts like this

How to plot a circular clustered heatmap with dendrogram
written 6.7 years ago by The

Hello, I'm trying to plot a single circular clustered heatmap with dendrogram. The two column expression data is available from this [pastebin link][1] I was …
extract dendrogram cluster from pheatmap
written 8.7 years ago by 1769mkc

This is a post from [stackoverflow][1] here they show how to extract dedrogram such in form of respective cluster but this is with heatmap.2 function …
how to display multiple row annotations on pheatmap
written 8.7 years ago by lavanya.kannan •

I am interested in adding multiple row annotations to my heatmap using the pheatmap function in R (example: https://stackoverflow.com/questions/41628450/r-pheatmap-change-annotation-colors-and-prevent-graphics-window-from-popping-up). The examples I see online all …
Testing for significant clustering in dendrograms of gene expression
written 9.3 years ago by 4galaxy77

I am looking for some help on a statistical test I could use on my dendrogram of gene expression. I have used the dendrogram/heatmap function …
showing row names and dendrogram in same side, using heatmap() or pheatmap()
written 9.6 years ago by Farbod

Dear Biostars, Hi. I am drawing a heatmap of differentially expressed genes in **R** using `heatmap()` function. I want to show my 88 row names/IDs …
Heatmap.2 R for differentially expressed genes DeSEQ2
written 10.5 years ago by User6891

Hi, I'm trying to make a heatmap for a set of differentially expressed genes. I'm using deseq2 in R together with the heatmap.2 function This …
Clustering differences between heatmap.2 and pheatmap
written 11.0 years ago by igor

I have been using `heatmap.2` for a while, but just discovered `pheatmap`. In `heatmap.2`, you can specify clustering settings via `distfun` and `hclustfun`. In `pheatmap`, …
R - pheatmap - changing column order
written 12.0 years ago by piotr.grabowski •

Dear Community, I am drawing a heatmap with pheatmap package in R. I would like to show a certain property of two datasets and show …
Need help with heatmap.2
written 12.1 years ago by madkitty

From a matrix of read counts per gene containing 1 control and 2 independent treatments (3 replicates each, total of 9 columns) I ran the …
Extract Dendrogram Information From Heatmap Generated By Heatmap.2
written 13.0 years ago by Ming Tommy Tang

<p>Hi all,</p> <p>I am having a hard time to extract the corresponding subgroup members in the heatmap generated by heatmap.2 in gplots. I have looked …