Plot features on tsne plot with high pLi scores
Hello,
I have used Seurat to obtain tsne plot and calculated the DE genes for each cluster. I have pLi scores for each of these DE genes and I want to somehow plot the genes that have pLi score >=0.9 on them. Using FeaturePlot in Seurat I could do 1 gene per plot but I was wondering if there is a better way to represent it on the tsne plot?
Thank you, Asma
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Biostar
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asmariyaz23 •
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asmariyaz23 •
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It can be done in scanpy. Thus it should be similar in seurat. The idea is you give a label to all the genes with pLi score>=0.9, and plot based on the given label.