how to extract just one fast sequence from a multiple sequence vcf?
Good afternoon. I apologize if my question is obvious, but I am new to the area and have difficulty. I have a vcf file of many sequences, and I only need to extract some sequences (2) in fasta format. So far I couldn't get a command on gat to perform this extraction. could someone point me to something where I could find an explanation and the execute command?
• 1,371 views
•
link
written
by
elienesantossilva09 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Clustered bacterial RefSeq?
written by predeus
-
SPAdes not running
written by emma7227d •
-
Heterozygous individuals and FastaAlternateReferenceMarker
written by gubrins
-
Multisample VCF to FASTA
written by gubrins
-
PennCNV-Affy BAF and LogR position notation for SNP6 data: SNP_A vs CN
written by lm687
-
Differently sized sequences in the clustal omega alignment
written by elienesantossilva09 •
-
Generating consensus sequence from bam file
written by elienesantossilva09 •
-
How to extract a sequence from a multi-fasta file based on its position?
written by Kumar
-
Extraction of first sequences from a big fasta file
written by vahapel
-
Gatk Snp Calling Test Set
written by Tryingtogetthere •
vcf's typically don't have sequences, are you sure that's what kind of file you've got?
I received this mission. I confess that I found it strange because until then I thought that vcf was a file that contained only the variants and information of them. então não é possível?
Yes, vcf file contain only variant information. Are you trying to extract the consensus sequence? Then here is a little tutorial how to do this: