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SNPs associated to a disease in the African population

Hello All,

I am a complete newbie in bioinformatics and would love to know a few approaches to solve a problem that I have now:

I would like to find all of the SNPs associated with a number of diseases in the African population. What are the ways to do that?

A step-by-step solution and relevant links are highly appreciated. Thanks a lot!

snp snp detection gwas
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updated by Biostar Biostar • written by parisa.ghvm • parisa.ghvm

"diseases in the African population" - Can you elaborate what you mean?

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written by Kevin Blighe Kevin Blighe

for example, I want to see which SNPs are associated with obesity in the African population and make a list of their rs numbers.

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written by parisa.ghvm • parisa.ghvm

There are quite a few studies. Just search for the following in your search engine of choice: ncbi gwas obesity african

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written by Kevin Blighe Kevin Blighe

Hi, its not clear if you would like to find a list of known associations or you are looking to discover new ones.

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written by i.sudbery i.sudbery

Hi :) I would like to make a list of the known ones.

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written by parisa.ghvm • parisa.ghvm

To the best of my knowledge, I can go to Ensembl and search for the disease and then find the variants. But I do not know how to narrow down the information to a certain population.

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written by parisa.ghvm • parisa.ghvm

Please use Add Reply of edit the toplevel question with new information.

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written by ATpoint ATpoint

To the best of my knowledge, I can go to Ensembl and search for the disease and then find the variants. But I do not know how to narrow down the information to a certain population.

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written by parisa.ghvm • parisa.ghvm

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