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Epistatic effect for two alleles

Hello,

I want to check the epistatic effects for two alleles that are significantly associated with a phenotype. Cases and controls are both about 30 patients. Also this is a candidate case control analysis.

I found some packages. What would you think?

EIP http://statgen.psu.edu/software/eip.html

MDR http://www.multifactordimensionalityreduction.org/

Which method is the best to check the epistasis? Or do you still recommend to use plink?

Thank you in advance!

gene snp
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updated by Biological information research group of Harbin medical university daqing campus • Biological information research group of Harbin medical university daqing campus • written by khn khn

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Why is there a lot of functionality that's not working right now with my biostar? How about bookstore and thumb up? thank you

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written by Biological information research group of Harbin medical university daqing campus • Biological information research group of Harbin medical university daqing campus

Please do not add irrelevant answers to random questions.

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