question about translocation of SV caller output
if the SV caller give that:
<tra> chr:3 pos: 333223 chr:5 pos: 444332
i understand that breakpoint was in that postion.
however, Translocation need two pairs of breakpoints. why there's no other breakpoints?
why only one of breakspoints is represented?
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9521ljh •
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Short read data won't span both ends of the translocation if it is very large, so the other breakpoint may/may not be reported elsewhere. Others may sometimes be reported as insertions
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But I see 2 positions in your example?