fastx_clipper run forever and never finish · Biostar

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fastx_clipper run forever and never finish

Hi everyone,

I have fastx_toolkit installed by Conda in Mac OS X and works well for a while, but these days I found that fastx_clipper started a job but never complete the job after several hours (and no CPU usage during fastx_clipper run, usually I noticed fastx_clipper takes 100% CPU resource during normal runs). Have anyone experienced similar problems? I am trying to fix it but without success.

Thanks,

Xiao

rna-seq

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written 7.0 years ago by xiaoleiusc

Do yourself a favor and use a more recent and faster alternative such as cutadapt, fastp, bbduk from BBmap suite, trimmomatic. fastx is very old.

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written 7.0 years ago by ATpoint

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