This is a test version of Biostars. For the public version, visit https://www.biostars.org.
hisat2 installation error

I installed hisat2 on mac. The command is as follows: brew install hisat2. However, when I execute hisat2-build ..., the following message appears.

dyld: Symbol not found: __ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEED1Ev
   Referenced from: /usr/local/bin/../Cellar/hisat2/2.1.0/bin/hisat2-align-s
   Expected in: /usr/lib/libstdc++.6.0.9.dylib
  in /usr/local/bin/../Cellar/hisat2/2.1.0/bin/hisat2-align-s
(ERR): Description of arguments failed!
Exiting now ...

I do not understand the meaning. I know that the installation was not successful, but please let me know how to handle it.

software error
• 3,464 views • link
updated by finswimmer finswimmer • written by nori • nori

Agreed. Alternatively use anaconda package manager. No need to compile standard software yourself.

• 0 views • link
written by ATpoint ATpoint

1 answer

Thank you for your comments. I was able to run the hisat2 with ./hisat2.

• 0 views • link
written by nori • nori

Log in to answer this question.

More posts like this